Luminex MasterPlex CT Tutorial Manual Manuel d'utilisateur

Tutorial for MasterPlex® GT v2 © 2006 Hitachi Software Engineering America, Ltd. All Rights Reserved.

http://www.miraibio.comPlex GT 10 To view the Allelic Frequencies, click on the Allele Frequency tab on the top. The count or frequency of each a

http://www.miraibio.comPlex GT 11 Close Window Haplotype Frequency tab To view the Haplotype Frequency, simply click on the Haplotype Fr

http://www.miraibio.comPlex GT 12 Analyzing the Data with the Graph Window MasterPlex GT enables the user to view the data in the form of bar grap

http://www.miraibio.comPlex GT 13 Toggle 2D and 3D Button Toggle MFI and RI values Show Dendrogram B

http://www.miraibio.comPlex GT 14 Heatmap Depth Bar Graph Tab

http://www.miraibio.comPlex GT 15 MasterPlex GT offers two ways of analyzing and comparing a pair of samples or alleles in the Graph window: 1) Sa

http://www.miraibio.comPlex GT 16 Allele by Allele Tab To perform analysis of two alleles, press the Allele by Allele Tab. Next, s

http://www.miraibio.comPlex GT 17 MasterPlex GT is capable of displaying the pairwise comparisons for all loci based on correlation coefficients wi

http://www.miraibio.comPlex GT 18 Homology Chart Tab To view a 3D graphical representation of the Homology Table, press the Homolo

http://www.miraibio.comPlex GT 19 Printing Reports MasterPlex GT allows the user to print the following reports:  Sample Information including

http://www.miraibio.comPlex GT 2 The MasterPlex GT software is designed for genotyping analysis of Single Nucleotide Polymorphisms (SNPs) and Human

http://www.miraibio.comPlex GT 20 Open Save Print Close The Preview window enables the user to Open, Save, and Pri

http://www.miraibio.comPlex GT 21 Congratulations! You have just finished analyzing the SNP data file utilizing MasterPlex GT v2. As you can see,

http://www.miraibio.comPlex GT 22 You can contact MiraiBio with any questions you have at (510) 337-2000 (USA phone number) or by sending an email t

http://www.miraibio.comPlex GT 3 Using the Typing Table Let’s start by opening a sample SNP data file. Press File and select Open Data File. Op

http://www.miraibio.comPlex GT 4 View data by Locus Loci shown as tabs To view data by locus, press the By Locus button and the loci will appe

http://www.miraibio.comPlex GT 5 Gradient Background view Press the Gradient Background button to view the intensity of the MFI values. The dar

http://www.miraibio.comPlex GT 6 Selecting Background Samples Wells A1 and D3 are the background samples for this particular data file. To set t

http://www.miraibio.comPlex GT 7 Setting Up the Allele Call Parameters MasterPlex GT v2 allows the user to set the stringency of allele calling u

http://www.miraibio.comPlex GT 8 The Parameter Setting window allows the user to insert the Allele Call parameters:  Minimum Events  Rela

http://www.miraibio.comPlex GT 9 Utilizing the Allele Call Window Press the Bell icon to view the Allele Calling results Paint Background toggl